HL_9AZC_026

3D structure

PDB id

9AZC (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome (Consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

9AZC|1|L5|U|1596, 9AZC|1|L5|A|1600, 9AZC|1|L5|A|1601

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9AZC_026 not in the Motif Atlas

Homologous match to HL_8CRE_019

Geometric discrepancy: 0.0794

The information below is about HL_8CRE_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_88205.2

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

9AZC|1|L5|A|1593
9AZC|1|L5|C|1594
9AZC|1|L5|G|1595
9AZC|1|L5|U|1596
9AZC|1|L5|G|1597
9AZC|1|L5|C|1598
9AZC|1|L5|A|1599
9AZC|1|L5|A|1600
9AZC|1|L5|A|1601
9AZC|1|L5|U|1602

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LP

60S ribosomal protein L17

Chain Lj

60S ribosomal protein L37