HL_9AZC_027

3D structure

PDB id

9AZC (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome (Consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

9AZC|1|L5|A|1630, 9AZC|1|L5|G|1633

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9AZC_027 not in the Motif Atlas

Homologous match to HL_8P9A_133

Geometric discrepancy: 0.0697

The information below is about HL_8P9A_133

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92598.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

9AZC|1|L5|G|1627
9AZC|1|L5|C|1628
9AZC|1|L5|G|1629
9AZC|1|L5|A|1630
9AZC|1|L5|A|1631
9AZC|1|L5|A|1632
9AZC|1|L5|G|1633
9AZC|1|L5|A|1634
9AZC|1|L5|C|1635

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LN

60S ribosomal protein L15

Chain Lj

60S ribosomal protein L37