HL_9AZC_033

3D structure

PDB id

9AZC (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome (Consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

9AZC|1|L5|U|1980, 9AZC|1|L5|A|1984

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9AZC_033 not in the Motif Atlas

Homologous match to HL_8CRE_026

Geometric discrepancy: 0.3505

The information below is about HL_8CRE_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9AZC|1|L5|C|1978
9AZC|1|L5|A|1979
9AZC|1|L5|U|1980
9AZC|1|L5|G|1981
9AZC|1|L5|G|1982
9AZC|1|L5|A|1983
9AZC|1|L5|A|1984
9AZC|1|L5|G|1985
9AZC|1|L5|U|1986
9AZC|1|L5|C|1987
9AZC|1|L5|G|1988

Current chains

Chain L5

28S rRNA

Nearby chains

Chain AT

Transfer RNA; tRNA

Chain Lt

60S ribosomal protein L12