HL_9AZC_038

3D structure

PDB id

9AZC (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome (Consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

9AZC|1|L5|G|2421, 9AZC|1|L5|U|2425

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9AZC_038 not in the Motif Atlas

Homologous match to HL_8P9A_144

Geometric discrepancy: 0.1551

The information below is about HL_8P9A_144

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

9AZC|1|L5|A|2420
9AZC|1|L5|G|2421
9AZC|1|L5|C|2422
9AZC|1|L5|A|2423
9AZC|1|L5|G|2424
9AZC|1|L5|U|2425
9AZC|1|L5|U|2426

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LP

60S ribosomal protein L17

Chain LR

60S ribosomal protein L19