HL_9AZC_074

3D structure

PDB id

9AZC (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome (Consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9AZC_074 not in the Motif Atlas

Homologous match to HL_8CRE_064

Geometric discrepancy: 0.0667

The information below is about HL_8CRE_064

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

9AZC|1|L5|C|4603
9AZC|1|L5|G|4604
9AZC|1|L5|A|4605
9AZC|1|L5|G|4606
9AZC|1|L5|A|4607
9AZC|1|L5|G|4608

Current chains

Chain L5

28S rRNA

Nearby chains

Chain AT

Transfer RNA; tRNA

Chain CF

eEF1A

Chain LH

60S ribosomal protein L9

Chain Lm

Large ribosomal subunit protein eL40