HL_9AZN_001
3D structure
- PDB id
- 9AZN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human A/P-P/E state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- GUAGGGUAUC
- Length
- 10 nucleotides
- Bulged bases
- 9AZN|1|AP|G|18, 9AZN|1|AP|G|19, 9AZN|1|AP|U|20|||A
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9AZN_001 not in the Motif Atlas
- Geometric match to HL_1F7U_001
- Geometric discrepancy: 0.2169
- The information below is about HL_1F7U_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_55043.1
- Basepair signature
- cWW-tSH-cWS-F
- Number of instances in this motif group
- 4
Unit IDs
9AZN|1|AP|G|12
9AZN|1|AP|U|13
9AZN|1|AP|A|14
9AZN|1|AP|G|15
9AZN|1|AP|G|18
9AZN|1|AP|G|19
9AZN|1|AP|U|20|||A
9AZN|1|AP|A|21
9AZN|1|AP|U|22
9AZN|1|AP|C|23
Current chains
- Chain AP
- A/P site tRNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain LJ
- 60S ribosomal protein L11
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