HL_9AZN_025

3D structure

PDB id

9AZN (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human A/P-P/E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9AZN_025 not in the Motif Atlas

Homologous match to HL_8P9A_131

Geometric discrepancy: 0.0961

The information below is about HL_8P9A_131

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

9AZN|1|L5|G|1561
9AZN|1|L5|G|1562
9AZN|1|L5|A|1563
9AZN|1|L5|A|1564
9AZN|1|L5|A|1565
9AZN|1|L5|C|1566

Current chains

Chain L5

28S rRNA

Nearby chains

Chain S3

Small subunit ribosomal RNA; SSU rRNA

Chain SN

40S ribosomal protein S13