HL_9AZN_026

3D structure

PDB id

9AZN (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human A/P-P/E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

9AZN|1|L5|U|1596, 9AZN|1|L5|A|1600, 9AZN|1|L5|A|1601

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9AZN_026 not in the Motif Atlas

Homologous match to HL_8CRE_019

Geometric discrepancy: 0.0882

The information below is about HL_8CRE_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_88205.2

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

9AZN|1|L5|A|1593
9AZN|1|L5|C|1594
9AZN|1|L5|G|1595
9AZN|1|L5|U|1596
9AZN|1|L5|G|1597
9AZN|1|L5|C|1598
9AZN|1|L5|A|1599
9AZN|1|L5|A|1600
9AZN|1|L5|A|1601
9AZN|1|L5|U|1602

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LP

60S ribosomal protein L17

Chain Lj

60S ribosomal protein L37