HL_9AZN_039

3D structure

PDB id

9AZN (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human A/P-P/E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

CGAGCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9AZN_039 not in the Motif Atlas

Homologous match to HL_8CRE_032

Geometric discrepancy: 0.161

The information below is about HL_8CRE_032

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

9AZN|1|L5|C|2458
9AZN|1|L5|G|2459
9AZN|1|L5|A|2460
9AZN|1|L5|G|2461
9AZN|1|L5|C|2462
9AZN|1|L5|G|2463

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LN

60S ribosomal protein L15

Chain Lj

60S ribosomal protein L37