HL_9AZN_044

3D structure

PDB id

9AZN (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human A/P-P/E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

GUUCUCUUU

Length

9 nucleotides

Bulged bases

9AZN|1|L5|U|2631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9AZN_044 not in the Motif Atlas

Homologous match to HL_8P9A_148

Geometric discrepancy: 0.2185

The information below is about HL_8P9A_148

Detailed Annotation

Pseudoknot geometry

Broad Annotation

Pseudoknot geometry

Motif group

HL_22758.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9AZN|1|L5|G|2624
9AZN|1|L5|U|2625
9AZN|1|L5|U|2626
9AZN|1|L5|C|2627
9AZN|1|L5|U|2628
9AZN|1|L5|C|2629
9AZN|1|L5|U|2630
9AZN|1|L5|U|2631
9AZN|1|L5|U|2632

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain LU

Heparin-binding protein HBp15