HL_9AZN_065

3D structure

PDB id

9AZN (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human A/P-P/E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

UCAAACGGUAACG

Length

13 nucleotides

Bulged bases

9AZN|1|L5|A|4214, 9AZN|1|L5|C|4221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9AZN_065 not in the Motif Atlas

Homologous match to HL_8P9A_166

Geometric discrepancy: 0.1094

The information below is about HL_8P9A_166

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

9AZN|1|L5|U|4210
9AZN|1|L5|C|4211
9AZN|1|L5|A|4212
9AZN|1|L5|A|4213
9AZN|1|L5|A|4214
9AZN|1|L5|C|4215
9AZN|1|L5|G|4216
9AZN|1|L5|G|4217
9AZN|1|L5|U|4218
9AZN|1|L5|A|4219
9AZN|1|L5|A|4220
9AZN|1|L5|C|4221
9AZN|1|L5|G|4222

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LI

60S ribosomal protein L10-like [Homo sapiens]

Chain LT

60S ribosomal protein L21

Chain Lb

60S ribosomal protein L29