3D structure

PDB id
9AZN (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human A/P-P/E state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.98 Å

Loop

Sequence
GAUCAGAUACC
Length
11 nucleotides
Bulged bases
9AZN|1|S3|U|1061
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9AZN_112 not in the Motif Atlas
Homologous match to HL_8P9A_211
Geometric discrepancy: 0.1395
The information below is about HL_8P9A_211
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_38491.1
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
11

Unit IDs

9AZN|1|S3|G|1054
9AZN|1|S3|A|1055
9AZN|1|S3|U|1056
9AZN|1|S3|C|1057
9AZN|1|S3|A|1058
9AZN|1|S3|G|1059
9AZN|1|S3|A|1060
9AZN|1|S3|U|1061
9AZN|1|S3|A|1062
9AZN|1|S3|C|1063
9AZN|1|S3|C|1064

Current chains

Chain S3
18S rRNA

Nearby chains

Chain L5
Large subunit ribosomal RNA; LSU rRNA
Chain PE
Transfer RNA; tRNA
Chain SO
Small ribosomal subunit protein uS11
Chain Sa
40S ribosomal protein S26

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.363 s