HL_9B0P_052

3D structure

PDB id

9B0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class1 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

9B0P|1|L5|A|3760

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B0P_052 not in the Motif Atlas

Homologous match to HL_8CRE_047

Geometric discrepancy: 0.2733

The information below is about HL_8CRE_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25847.2

Basepair signature

cWW-F-cSH-tHW-F-F-F

Number of instances in this motif group

3

Unit IDs

9B0P|1|L5|G|3757
9B0P|1|L5|U|3758
9B0P|1|L5|A|3759
9B0P|1|L5|A|3760
9B0P|1|L5|C|3761
9B0P|1|L5|U|3762
9B0P|1|L5|A|3763
9B0P|1|L5|U|3764
9B0P|1|L5|G|3765
9B0P|1|L5|A|3766
9B0P|1|L5|C|3767

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain CB

Elongation factor 2

Chain S2

Small subunit ribosomal RNA; SSU rRNA