HL_9B0S_002

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUUCGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B0S_002 not in the Motif Atlas

Homologous match to HL_4V90_034

Geometric discrepancy: 0.2496

The information below is about HL_4V90_034

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

9B0S|1|AT|G|54
9B0S|1|AT|U|55
9B0S|1|AT|U|56
9B0S|1|AT|C|57
9B0S|1|AT|G|58
9B0S|1|AT|A|59
9B0S|1|AT|A|60
9B0S|1|AT|A|61
9B0S|1|AT|C|62

Current chains

Chain AT

A/T site tRNA [Homo sapiens]

Nearby chains

Chain CF

Putative elongation factor 1-alpha-like 3

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain Lt

60S ribosomal protein L12 [Homo sapiens]