HL_9B0S_026

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCGCG

Length

5 nucleotides

Bulged bases

9B0S|1|L5|C|1481

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B0S_026 not in the Motif Atlas

Geometric match to HL_8XZL_001

Geometric discrepancy: 0.2664

The information below is about HL_8XZL_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_43517.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

9B0S|1|L5|C|1480
9B0S|1|L5|C|1481
9B0S|1|L5|G|1482
9B0S|1|L5|C|1483
9B0S|1|L5|G|1484

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LL

Large ribosomal subunit protein eL13

Chain Li

60S ribosomal protein L36