3D structure

PDB id
9B0S (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human top-top di-ribosome structure (Composite map)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
CAUGGAAGUCG
Length
11 nucleotides
Bulged bases
9B0S|1|L5|U|1980, 9B0S|1|L5|A|1984
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9B0S_035 not in the Motif Atlas
Homologous match to HL_8CRE_026
Geometric discrepancy: 0.3738
The information below is about HL_8CRE_026
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_19210.3
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
7

Unit IDs

9B0S|1|L5|C|1978
9B0S|1|L5|A|1979
9B0S|1|L5|U|1980
9B0S|1|L5|G|1981
9B0S|1|L5|G|1982
9B0S|1|L5|A|1983
9B0S|1|L5|A|1984
9B0S|1|L5|G|1985
9B0S|1|L5|U|1986
9B0S|1|L5|C|1987
9B0S|1|L5|G|1988

Current chains

Chain L5
28S rRNA [Homo sapiens]

Nearby chains

Chain AT
Transfer RNA; tRNA
Chain Lt
60S ribosomal protein L12 [Homo sapiens]

Coloring options:


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