HL_9B0S_050

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGCAGCAG

Length

8 nucleotides

Bulged bases

9B0S|1|L5|C|2794, 9B0S|1|L5|G|2796, 9B0S|1|L5|A|2798

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B0S_050 not in the Motif Atlas

Homologous match to HL_8P9A_152

Geometric discrepancy: 0.0948

The information below is about HL_8P9A_152

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

11

Unit IDs

9B0S|1|L5|C|2792
9B0S|1|L5|G|2793
9B0S|1|L5|C|2794
9B0S|1|L5|A|2795
9B0S|1|L5|G|2796
9B0S|1|L5|C|2797
9B0S|1|L5|A|2798
9B0S|1|L5|G|2799

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LP

60S ribosomal protein L17

Chain Lj

60S ribosomal protein L37

Chain Ll

60S ribosomal protein L39