HL_9B0S_056

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUUAAUUAAAA

Length

11 nucleotides

Bulged bases

9B0S|1|L5|A|3642, 9B0S|1|L5|A|3643, 9B0S|1|L5|U|3644, 9B0S|1|L5|A|3648

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B0S_056 not in the Motif Atlas

Homologous match to HL_8CRE_044

Geometric discrepancy: 0.1331

The information below is about HL_8CRE_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01962.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

9B0S|1|L5|U|3639
9B0S|1|L5|U|3640
9B0S|1|L5|U|3641
9B0S|1|L5|A|3642
9B0S|1|L5|A|3643
9B0S|1|L5|U|3644
9B0S|1|L5|U|3645
9B0S|1|L5|A|3646
9B0S|1|L5|A|3647
9B0S|1|L5|A|3648
9B0S|1|L5|A|3649

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Lj

60S ribosomal protein L37