HL_9B0S_120

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGCGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B0S_120 not in the Motif Atlas

Geometric match to HL_5J7L_180

Geometric discrepancy: 0.3814

The information below is about HL_5J7L_180

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

9B0S|1|S2|A|1353
9B0S|1|S2|G|1354
9B0S|1|S2|C|1355
9B0S|1|S2|G|1356
9B0S|1|S2|A|1357
9B0S|1|S2|U|1358

Current chains

Chain S2

18S rRNA [Homo sapiens]

Nearby chains

Chain SA

40S ribosomal protein SA

Chain SC

40S ribosomal protein S2