HL_9B0S_129

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUAGGGUAUC

Length

10 nucleotides

Bulged bases

9B0S|1|aP|G|18, 9B0S|1|aP|G|19, 9B0S|1|aP|U|20|||A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B0S_129 not in the Motif Atlas

Geometric match to HL_1F7U_001

Geometric discrepancy: 0.3014

The information below is about HL_1F7U_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40252.4

Basepair signature

cWW-tSH-cWS-F

Number of instances in this motif group

5

Unit IDs

9B0S|1|aP|G|12
9B0S|1|aP|U|13
9B0S|1|aP|A|14
9B0S|1|aP|G|15
9B0S|1|aP|G|18
9B0S|1|aP|G|19
9B0S|1|aP|U|20|||A
9B0S|1|aP|A|21
9B0S|1|aP|U|22
9B0S|1|aP|C|23

Current chains

Chain aP

A/P site tRNA [Homo sapiens]

Nearby chains

Chain l5

Large subunit ribosomal RNA; LSU rRNA

Chain lJ

60S ribosomal protein L11