HL_9B0S_155

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

9B0S|1|l5|A|1630, 9B0S|1|l5|G|1633

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B0S_155 not in the Motif Atlas

Homologous match to HL_8P9A_133

Geometric discrepancy: 0.0768

The information below is about HL_8P9A_133

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87553.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9B0S|1|l5|G|1627
9B0S|1|l5|C|1628
9B0S|1|l5|G|1629
9B0S|1|l5|A|1630
9B0S|1|l5|A|1631
9B0S|1|l5|A|1632
9B0S|1|l5|G|1633
9B0S|1|l5|A|1634
9B0S|1|l5|C|1635

Current chains

Chain l5

28S rRNA [Homo sapiens]

Nearby chains

Chain lA

60S ribosomal protein L8

Chain lN

60S ribosomal protein L15

Chain lj

60S ribosomal protein L37