HL_9B0S_156

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

9B0S|1|l5|C|1676, 9B0S|1|l5|A|1679

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B0S_156 not in the Motif Atlas

Homologous match to HL_8P9A_134

Geometric discrepancy: 0.312

The information below is about HL_8P9A_134

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70782.2

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

9B0S|1|l5|C|1675
9B0S|1|l5|C|1676
9B0S|1|l5|U|1677
9B0S|1|l5|C|1678
9B0S|1|l5|A|1679
9B0S|1|l5|G|1680

Current chains

Chain l5

28S rRNA [Homo sapiens]

Nearby chains

Chain la

60S ribosomal protein L27a

Chain lb

Large ribosomal subunit protein eL29

Chain lo

60S ribosomal protein L36a