HL_9B0S_172
3D structure
- PDB id
- 9B0S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human top-top di-ribosome structure (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GUUCUCUUU
- Length
- 9 nucleotides
- Bulged bases
- 9B0S|1|l5|U|2631
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9B0S_172 not in the Motif Atlas
- Homologous match to HL_8P9A_148
- Geometric discrepancy: 0.2334
- The information below is about HL_8P9A_148
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- Pseudoknot geometry
- Motif group
- HL_22758.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9B0S|1|l5|G|2624
9B0S|1|l5|U|2625
9B0S|1|l5|U|2626
9B0S|1|l5|C|2627
9B0S|1|l5|U|2628
9B0S|1|l5|C|2629
9B0S|1|l5|U|2630
9B0S|1|l5|U|2631
9B0S|1|l5|U|2632
Current chains
- Chain l5
- 28S rRNA [Homo sapiens]
Nearby chains
- Chain lR
- 60S ribosomal protein L19
- Chain lU
- Heparin-binding protein HBp15
Coloring options: