HL_9B0S_172

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUUCUCUUU

Length

9 nucleotides

Bulged bases

9B0S|1|l5|U|2631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B0S_172 not in the Motif Atlas

Homologous match to HL_8P9A_148

Geometric discrepancy: 0.2334

The information below is about HL_8P9A_148

Detailed Annotation

Pseudoknot geometry

Broad Annotation

Pseudoknot geometry

Motif group

HL_68642.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

9B0S|1|l5|G|2624
9B0S|1|l5|U|2625
9B0S|1|l5|U|2626
9B0S|1|l5|C|2627
9B0S|1|l5|U|2628
9B0S|1|l5|C|2629
9B0S|1|l5|U|2630
9B0S|1|l5|U|2631
9B0S|1|l5|U|2632

Current chains

Chain l5

28S rRNA [Homo sapiens]

Nearby chains

Chain lR

60S ribosomal protein L19

Chain lU

Heparin-binding protein HBp15