HL_9B0S_173

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUUCGCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B0S_173 not in the Motif Atlas

Geometric match to HL_4V9F_039

Geometric discrepancy: 0.3228

The information below is about HL_4V9F_039

Detailed Annotation

Other HL

Broad Annotation

Other HL

Motif group

HL_67772.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

9B0S|1|l5|G|2664
9B0S|1|l5|U|2665
9B0S|1|l5|U|2666
9B0S|1|l5|C|2667
9B0S|1|l5|G|2668
9B0S|1|l5|C|2669
9B0S|1|l5|C|2670

Current chains

Chain l5

28S rRNA [Homo sapiens]

Nearby chains

Chain lR

60S ribosomal protein L19

Chain lp

60S ribosomal protein L37a