HL_9B0S_198
3D structure
- PDB id
- 9B0S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human top-top di-ribosome structure (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UUUGGGUUUUA
- Length
- 11 nucleotides
- Bulged bases
- 9B0S|1|l5|U|4354
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9B0S_198 not in the Motif Atlas
- Geometric match to HL_7JRT_001
- Geometric discrepancy: 0.344
- The information below is about HL_7JRT_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_67407.5
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
9B0S|1|l5|U|4352
9B0S|1|l5|U|4353
9B0S|1|l5|U|4354
9B0S|1|l5|G|4355
9B0S|1|l5|G|4356
9B0S|1|l5|G|4357
9B0S|1|l5|U|4358
9B0S|1|l5|U|4359
9B0S|1|l5|U|4360
9B0S|1|l5|U|4361
9B0S|1|l5|A|4362
Current chains
- Chain l5
- 28S rRNA [Homo sapiens]
Nearby chains
- Chain lL
- Large ribosomal subunit protein eL13
- Chain la
- 60S ribosomal protein L27a
- Chain li
- 60S ribosomal protein L36
- Chain lo
- 60S ribosomal protein L36a
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