HL_9B0S_199

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

9B0S|1|l5|U|4419

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B0S_199 not in the Motif Atlas

Homologous match to HL_8P9A_172

Geometric discrepancy: 0.2702

The information below is about HL_8P9A_172

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32735.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9B0S|1|l5|C|4417
9B0S|1|l5|G|4418
9B0S|1|l5|U|4419
9B0S|1|l5|U|4420
9B0S|1|l5|C|4421
9B0S|1|l5|A|4422
9B0S|1|l5|U|4423
9B0S|1|l5|A|4424
9B0S|1|l5|G|4425

Current chains

Chain l5

28S rRNA [Homo sapiens]

Nearby chains

Chain cB

Elongation factor 2

Chain lI

Ribosomal protein uL16-like

Chain lm

Large ribosomal subunit protein eL40