HL_9B0S_209

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUCCCUCG

Length

8 nucleotides

Bulged bases

9B0S|1|l5|C|5023, 9B0S|1|l5|U|5026, 9B0S|1|l5|C|5027

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B0S_209 not in the Motif Atlas

Homologous match to HL_8CRE_070

Geometric discrepancy: 0.5756

The information below is about HL_8CRE_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

9B0S|1|l5|C|5021
9B0S|1|l5|U|5022
9B0S|1|l5|C|5023
9B0S|1|l5|C|5024
9B0S|1|l5|C|5025
9B0S|1|l5|U|5026
9B0S|1|l5|C|5027
9B0S|1|l5|G|5028

Current chains

Chain l5

28S rRNA [Homo sapiens]

Nearby chains

Chain sI

40S ribosomal protein S8