HL_9B0S_219

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUUCAAGUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B0S_219 not in the Motif Atlas

Homologous match to HL_1H3E_004

Geometric discrepancy: 0.1881

The information below is about HL_1H3E_004

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

9B0S|1|pE|G|53
9B0S|1|pE|U|54
9B0S|1|pE|U|55
9B0S|1|pE|C|56
9B0S|1|pE|A|57
9B0S|1|pE|A|58
9B0S|1|pE|G|59
9B0S|1|pE|U|60
9B0S|1|pE|C|61

Current chains

Chain pE

P/E site tRNA [Homo sapiens]

Nearby chains

Chain l5

Large subunit ribosomal RNA; LSU rRNA

Chain lz

60S ribosomal protein L10a