HL_9B0S_220
3D structure
- PDB id
- 9B0S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human top-top di-ribosome structure (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GUUGAUCCUGC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9B0S_220 not in the Motif Atlas
- Homologous match to HL_8CRE_191
- Geometric discrepancy: 0.0806
- The information below is about HL_8CRE_191
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_89881.5
- Basepair signature
- cWW-tHW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
9B0S|1|s2|G|7
9B0S|1|s2|U|8
9B0S|1|s2|U|9
9B0S|1|s2|G|10
9B0S|1|s2|A|11
9B0S|1|s2|U|12
9B0S|1|s2|C|13
9B0S|1|s2|C|14
9B0S|1|s2|U|15
9B0S|1|s2|G|16
9B0S|1|s2|C|17
Current chains
- Chain s2
- 18S rRNA [Homo sapiens]
Nearby chains
- Chain sC
- 40S ribosomal protein S2
- Chain sX
- 40S ribosomal protein S23
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