HL_9B0S_224
3D structure
- PDB id
- 9B0S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human top-top di-ribosome structure (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GGUGACUC
- Length
- 8 nucleotides
- Bulged bases
- 9B0S|1|s2|U|294
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9B0S_224 not in the Motif Atlas
- Homologous match to HL_8CRE_196
- Geometric discrepancy: 0.2917
- The information below is about HL_8CRE_196
- Detailed Annotation
- T-loop with 1 bulged base
- Broad Annotation
- T-loop
- Motif group
- HL_77436.5
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 23
Unit IDs
9B0S|1|s2|G|288
9B0S|1|s2|G|289
9B0S|1|s2|U|290
9B0S|1|s2|G|291
9B0S|1|s2|A|292
9B0S|1|s2|C|293
9B0S|1|s2|U|294
9B0S|1|s2|C|295
Current chains
- Chain s2
- 18S rRNA [Homo sapiens]
Nearby chains
- Chain sE
- Small ribosomal subunit protein eS4, X isoform
- Chain sG
- 40S ribosomal protein S6
- Chain sL
- 40S ribosomal protein S11
Coloring options: