HL_9B0S_228
3D structure
- PDB id
- 9B0S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human top-top di-ribosome structure (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CCUGAGAAACGG
- Length
- 12 nucleotides
- Bulged bases
- 9B0S|1|s2|C|450, 9B0S|1|s2|G|451
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9B0S_228 not in the Motif Atlas
- Homologous match to HL_8CRE_200
- Geometric discrepancy: 0.0972
- The information below is about HL_8CRE_200
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
9B0S|1|s2|C|441
9B0S|1|s2|C|442
9B0S|1|s2|U|443
9B0S|1|s2|G|444
9B0S|1|s2|A|445
9B0S|1|s2|G|446
9B0S|1|s2|A|447
9B0S|1|s2|A|448
9B0S|1|s2|A|449
9B0S|1|s2|C|450
9B0S|1|s2|G|451
9B0S|1|s2|G|452
Current chains
- Chain s2
- 18S rRNA [Homo sapiens]
Nearby chains
- Chain sE
- Small ribosomal subunit protein eS4, X isoform
- Chain sG
- 40S ribosomal protein S6
- Chain sI
- 40S ribosomal protein S8
- Chain sY
- 40S ribosomal protein S24
Coloring options: