HL_9B0S_238
3D structure
- PDB id
- 9B0S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human top-top di-ribosome structure (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- AGGUGAAAUU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9B0S_238 not in the Motif Atlas
- Homologous match to HL_8CRE_210
- Geometric discrepancy: 0.1104
- The information below is about HL_8CRE_210
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_38491.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
9B0S|1|s2|A|957
9B0S|1|s2|G|958
9B0S|1|s2|G|959
9B0S|1|s2|U|960
9B0S|1|s2|G|961
9B0S|1|s2|A|962
9B0S|1|s2|A|963
9B0S|1|s2|A|964
9B0S|1|s2|U|965
9B0S|1|s2|U|966
Current chains
- Chain s2
- 18S rRNA [Homo sapiens]
Nearby chains
- Chain l5
- Large subunit ribosomal RNA; LSU rRNA
- Chain sF
- 40S ribosomal protein S5
- Chain sO
- Small ribosomal subunit protein uS11
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