HL_9B0S_245
3D structure
- PDB id
- 9B0S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human top-top di-ribosome structure (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- AUUGAUAGCU
- Length
- 10 nucleotides
- Bulged bases
- 9B0S|1|s2|U|1300, 9B0S|1|s2|G|1302
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9B0S_245 not in the Motif Atlas
- Homologous match to HL_8CRE_217
- Geometric discrepancy: 0.1826
- The information below is about HL_8CRE_217
- Detailed Annotation
- GNRA wlth extra near cWW
- Broad Annotation
- GNRA wlth extra near cWW
- Motif group
- HL_45359.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
9B0S|1|s2|A|1295
9B0S|1|s2|U|1296
9B0S|1|s2|U|1297
9B0S|1|s2|G|1298
9B0S|1|s2|A|1299
9B0S|1|s2|U|1300
9B0S|1|s2|A|1301
9B0S|1|s2|G|1302
9B0S|1|s2|C|1303
9B0S|1|s2|U|1304
Current chains
- Chain s2
- 18S rRNA [Homo sapiens]
Nearby chains
- Chain sP
- Small ribosomal subunit protein uS19
- Chain sd
- 40S ribosomal protein S29
- Chain sf
- Ubiquitin-40S ribosomal protein S27a
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