3D structure

PDB id
9B0S (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human top-top di-ribosome structure (Composite map)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
AUUGAUAGCU
Length
10 nucleotides
Bulged bases
9B0S|1|s2|U|1300, 9B0S|1|s2|G|1302
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9B0S_245 not in the Motif Atlas
Homologous match to HL_8CRE_217
Geometric discrepancy: 0.1826
The information below is about HL_8CRE_217
Detailed Annotation
GNRA wlth extra near cWW
Broad Annotation
GNRA wlth extra near cWW
Motif group
HL_45359.1
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
10

Unit IDs

9B0S|1|s2|A|1295
9B0S|1|s2|U|1296
9B0S|1|s2|U|1297
9B0S|1|s2|G|1298
9B0S|1|s2|A|1299
9B0S|1|s2|U|1300
9B0S|1|s2|A|1301
9B0S|1|s2|G|1302
9B0S|1|s2|C|1303
9B0S|1|s2|U|1304

Current chains

Chain s2
18S rRNA [Homo sapiens]

Nearby chains

Chain sP
Small ribosomal subunit protein uS19
Chain sd
40S ribosomal protein S29
Chain sf
Ubiquitin-40S ribosomal protein S27a

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1937 s