3D structure

PDB id
9B11 (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human unrotated hibernating without CCDC124 state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.77 Å

Loop

Sequence
ACUUUUAAU
Length
9 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9B11_002 not in the Motif Atlas
Homologous match to HL_5UD5_002
Geometric discrepancy: 0.271
The information below is about HL_5UD5_002
Detailed Annotation
tRNA anticodon loop
Broad Annotation
Anticodon loop
Motif group
HL_68642.1
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
12

Unit IDs

9B11|1|Et|A|31
9B11|1|Et|C|32
9B11|1|Et|U|33
9B11|1|Et|U|34
9B11|1|Et|U|35
9B11|1|Et|U|36
9B11|1|Et|A|37
9B11|1|Et|A|38
9B11|1|Et|U|39

Current chains

Chain Et
E site tRNA

Nearby chains

Chain S2
Small subunit ribosomal RNA; SSU rRNA
Chain SF
40S ribosomal protein S5
Chain SO
Small ribosomal subunit protein uS11
Chain Sc
40S ribosomal protein S28

Coloring options:


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