HL_9B11_008

3D structure

PDB id

9B11 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human unrotated hibernating without CCDC124 state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

9B11|1|L5|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B11_008 not in the Motif Atlas

Geometric match to HL_1P6V_004

Geometric discrepancy: 0.3224

The information below is about HL_1P6V_004

Detailed Annotation

T-loop with 2 bulged bases not stacked

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

9B11|1|L5|U|204
9B11|1|L5|C|205
9B11|1|L5|U|206
9B11|1|L5|G|207
9B11|1|L5|A|208
9B11|1|L5|U|209
9B11|1|L5|C|210
9B11|1|L5|G|211

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LY

60S ribosomal protein L26

Chain Le

60S ribosomal protein L32