3D structure

PDB id
9B11 (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human unrotated hibernating without CCDC124 state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.77 Å

Loop

Sequence
GGAAAC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9B11_025 not in the Motif Atlas
Homologous match to HL_8CRE_018
Geometric discrepancy: 0.0994
The information below is about HL_8CRE_018
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_37824.7
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
349

Unit IDs

9B11|1|L5|G|1561
9B11|1|L5|G|1562
9B11|1|L5|A|1563
9B11|1|L5|A|1564
9B11|1|L5|A|1565
9B11|1|L5|C|1566

Current chains

Chain L5
28S rRNA

Nearby chains

Chain Lp
60S ribosomal protein L37a
Chain S2
Small subunit ribosomal RNA; SSU rRNA
Chain SL
40S ribosomal protein S11
Chain SN
40S ribosomal protein S13

Coloring options:


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