3D structure

PDB id
9B11 (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human unrotated hibernating without CCDC124 state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.77 Å

Loop

Sequence
GCGAAAGAC
Length
9 nucleotides
Bulged bases
9B11|1|L5|A|1630, 9B11|1|L5|G|1633
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9B11_027 not in the Motif Atlas
Homologous match to HL_8P9A_133
Geometric discrepancy: 0.071
The information below is about HL_8P9A_133
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_79004.1
Basepair signature
cWW-cWW-tSW-F
Number of instances in this motif group
7

Unit IDs

9B11|1|L5|G|1627
9B11|1|L5|C|1628
9B11|1|L5|G|1629
9B11|1|L5|A|1630
9B11|1|L5|A|1631
9B11|1|L5|A|1632
9B11|1|L5|G|1633
9B11|1|L5|A|1634
9B11|1|L5|C|1635

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LA
60S ribosomal protein L8
Chain LN
60S ribosomal protein L15
Chain Lj
60S ribosomal protein L37

Coloring options:


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