HL_9B11_045

3D structure

PDB id

9B11 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human unrotated hibernating without CCDC124 state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

GUUCGCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B11_045 not in the Motif Atlas

Geometric match to HL_4V9F_039

Geometric discrepancy: 0.3108

The information below is about HL_4V9F_039

Detailed Annotation

Other HL

Broad Annotation

Other HL

Motif group

HL_67772.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

9B11|1|L5|G|2664
9B11|1|L5|U|2665
9B11|1|L5|U|2666
9B11|1|L5|C|2667
9B11|1|L5|G|2668
9B11|1|L5|C|2669
9B11|1|L5|C|2670

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain Lp

60S ribosomal protein L37a