3D structure

PDB id
9B11 (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human unrotated hibernating without CCDC124 state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.77 Å

Loop

Sequence
GACAGAAAC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9B11_065 not in the Motif Atlas
Homologous match to HL_8P9A_167
Geometric discrepancy: 0.148
The information below is about HL_8P9A_167
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_50860.2
Basepair signature
cWW-F-cWH-F-F-F-F
Number of instances in this motif group
6

Unit IDs

9B11|1|L5|G|4250
9B11|1|L5|A|4251
9B11|1|L5|C|4252
9B11|1|L5|A|4253
9B11|1|L5|G|4254
9B11|1|L5|A|4255
9B11|1|L5|A|4256
9B11|1|L5|A|4257
9B11|1|L5|C|4258

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LJ
60S ribosomal protein L11

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.163 s