HL_9B11_067

3D structure

PDB id

9B11 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human unrotated hibernating without CCDC124 state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

UUCAGUACG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B11_067 not in the Motif Atlas

Homologous match to HL_8CRE_057

Geometric discrepancy: 0.1678

The information below is about HL_8CRE_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80599.2

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9B11|1|L5|U|4301
9B11|1|L5|U|4302
9B11|1|L5|C|4303
9B11|1|L5|A|4304
9B11|1|L5|G|4305
9B11|1|L5|U|4306
9B11|1|L5|A|4307
9B11|1|L5|C|4308
9B11|1|L5|G|4309

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LQ

60S ribosomal protein L18

Chain LT

60S ribosomal protein L21

Chain La

60S ribosomal protein L27a

Chain Lo

60S ribosomal protein L36a