3D structure

PDB id
9B11 (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human unrotated hibernating without CCDC124 state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.77 Å

Loop

Sequence
CGUUCAUAG
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9B11_070 not in the Motif Atlas
Homologous match to HL_8P9A_172
Geometric discrepancy: 0.1232
The information below is about HL_8P9A_172
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_52011.1
Basepair signature
cWW-tSH-F-F-F-F-F
Number of instances in this motif group
9

Unit IDs

9B11|1|L5|C|4417
9B11|1|L5|G|4418
9B11|1|L5|U|4419
9B11|1|L5|U|4420
9B11|1|L5|C|4421
9B11|1|L5|A|4422
9B11|1|L5|U|4423
9B11|1|L5|A|4424
9B11|1|L5|G|4425

Current chains

Chain L5
28S rRNA

Nearby chains

Chain CB
eEF2
Chain LI
60S ribosomal protein L10-like
Chain Lm
Large ribosomal subunit protein eL40

Coloring options:


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