HL_9B11_079

3D structure

PDB id

9B11 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human unrotated hibernating without CCDC124 state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

9B11|1|L5|U|4976

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B11_079 not in the Motif Atlas

Homologous match to HL_8CRE_069

Geometric discrepancy: 0.1025

The information below is about HL_8CRE_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9B11|1|L5|G|4975
9B11|1|L5|U|4976
9B11|1|L5|A|4977
9B11|1|L5|G|4978
9B11|1|L5|A|4979
9B11|1|L5|C|4980
9B11|1|L5|G|4981
9B11|1|L5|A|4982
9B11|1|L5|C|4983

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LP

60S ribosomal protein L17

Chain Ld

60S ribosomal protein L31