3D structure

PDB id
9B11 (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human unrotated hibernating without CCDC124 state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.77 Å

Loop

Sequence
GGUGACUC
Length
8 nucleotides
Bulged bases
9B11|1|S2|U|294
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9B11_092 not in the Motif Atlas
Homologous match to HL_8CRE_196
Geometric discrepancy: 0.3064
The information below is about HL_8CRE_196
Detailed Annotation
T-loop with 1 bulged base
Broad Annotation
T-loop
Motif group
HL_67772.1
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
13

Unit IDs

9B11|1|S2|G|288
9B11|1|S2|G|289
9B11|1|S2|U|290
9B11|1|S2|G|291
9B11|1|S2|A|292
9B11|1|S2|C|293
9B11|1|S2|U|294
9B11|1|S2|C|295

Current chains

Chain S2
18S rRNA

Nearby chains

Chain SE
Small ribosomal subunit protein eS4, X isoform
Chain SG
40S ribosomal protein S6
Chain SL
40S ribosomal protein S11

Coloring options:


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