3D structure

PDB id
9B11 (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human unrotated hibernating without CCDC124 state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.77 Å

Loop

Sequence
GACUCAACAC
Length
10 nucleotides
Bulged bases
9B11|1|S2|A|1253
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9B11_112 not in the Motif Atlas
Homologous match to HL_8P9A_215
Geometric discrepancy: 0.105
The information below is about HL_8P9A_215
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_97521.1
Basepair signature
cWW-F-F-F-F-F-F-F
Number of instances in this motif group
5

Unit IDs

9B11|1|S2|G|1245
9B11|1|S2|A|1246
9B11|1|S2|C|1247
9B11|1|S2|U|1248
9B11|1|S2|C|1249
9B11|1|S2|A|1250
9B11|1|S2|A|1251
9B11|1|S2|C|1252
9B11|1|S2|A|1253
9B11|1|S2|C|1254

Current chains

Chain S2
18S rRNA

Nearby chains

Chain CB
eEF2
Chain SQ
Small ribosomal subunit protein uS9
Chain SU
40S ribosomal protein S20
Chain Sd
40S ribosomal protein S29

Coloring options:


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