HL_9B24_022

3D structure

PDB id

9B24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT strain gidB mutant mycobacterial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

GAUGCAACGC

Length

10 nucleotides

Bulged bases

9B24|1|A|G|953

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B24_022 not in the Motif Atlas

Homologous match to HL_5J7L_021

Geometric discrepancy: 0.2565

The information below is about HL_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

9B24|1|A|G|945
9B24|1|A|A|946
9B24|1|A|U|947
9B24|1|A|G|948
9B24|1|A|C|949
9B24|1|A|A|950
9B24|1|A|A|951
9B24|1|A|C|952
9B24|1|A|G|953
9B24|1|A|C|954

Current chains

Chain A

RNA (1528-MER)

Nearby chains

Chain I

Small ribosomal subunit protein uS9

Chain J

Small ribosomal subunit protein uS10