HL_9B24_030

3D structure

PDB id

9B24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT strain gidB mutant mycobacterial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

CUGCAACUCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B24_030 not in the Motif Atlas

Homologous match to HL_5J7L_028

Geometric discrepancy: 0.2676

The information below is about HL_5J7L_028

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_02887.3

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9B24|1|A|C|1296
9B24|1|A|U|1297
9B24|1|A|G|1298
9B24|1|A|C|1299
9B24|1|A|A|1300
9B24|1|A|A|1301
9B24|1|A|C|1302
9B24|1|A|U|1303
9B24|1|A|C|1304
9B24|1|A|G|1305

Current chains

Chain A

RNA (1528-MER)

Nearby chains

Chain M

Small ribosomal subunit protein uS13

Chain N

Small ribosomal subunit protein uS14B