HL_9B24_033

3D structure

PDB id

9B24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT strain gidB mutant mycobacterial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

CGGAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B24_033 not in the Motif Atlas

Homologous match to HL_5J7L_031

Geometric discrepancy: 0.1715

The information below is about HL_5J7L_031

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

9B24|1|A|C|1499
9B24|1|A|G|1500
9B24|1|A|G|1501
9B24|1|A|A|1502
9B24|1|A|A|1503
9B24|1|A|G|1504

Current chains

Chain A

RNA (1528-MER)

Nearby chains

Chain Y

Large subunit ribosomal RNA; LSU rRNA