HL_9B24_034

3D structure

PDB id

9B24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT strain gidB mutant mycobacterial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

CAUCCCG

Length

7 nucleotides

Bulged bases

9B24|1|U|C|42

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B24_034 not in the Motif Atlas

Homologous match to HL_8OI5_069

Geometric discrepancy: 0.3204

The information below is about HL_8OI5_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59381.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

13

Unit IDs

9B24|1|U|C|39
9B24|1|U|A|40
9B24|1|U|U|41
9B24|1|U|C|42
9B24|1|U|C|43
9B24|1|U|C|44
9B24|1|U|G|45

Current chains

Chain U

5S rRNA

Nearby chains

Chain Y

Large subunit ribosomal RNA; LSU rRNA

Chain c

Large ribosomal subunit protein uL5

Chain k

Large ribosomal subunit protein uL18