HL_9B24_037

3D structure

PDB id

9B24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT strain gidB mutant mycobacterial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

UGUCAACCGA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B24_037 not in the Motif Atlas

Homologous match to HL_4WF9_002

Geometric discrepancy: 0.4371

The information below is about HL_4WF9_002

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_00911.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

9B24|1|Y|U|84
9B24|1|Y|G|85
9B24|1|Y|U|86
9B24|1|Y|C|87
9B24|1|Y|A|88
9B24|1|Y|A|89
9B24|1|Y|C|90
9B24|1|Y|C|91
9B24|1|Y|G|92
9B24|1|Y|A|93

Current chains

Chain Y

23S rRNA

Nearby chains

Chain p

Large ribosomal subunit protein uL23

Chain q

Large ribosomal subunit protein uL24

Chain u

Large ribosomal subunit protein uL29