HL_9B24_039

3D structure

PDB id

9B24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT strain gidB mutant mycobacterial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

AGUGAUGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B24_039 not in the Motif Atlas

Homologous match to HL_4WF9_004

Geometric discrepancy: 0.2907

The information below is about HL_4WF9_004

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.3

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9B24|1|Y|A|134
9B24|1|Y|G|135
9B24|1|Y|U|136
9B24|1|Y|G|137
9B24|1|Y|A|138
9B24|1|Y|U|139
9B24|1|Y|G|140
9B24|1|Y|U|141

Current chains

Chain Y

23S rRNA

Nearby chains

Chain p

Large ribosomal subunit protein uL23